Web Reference: Aug 28, 2025 · MRtrix3 provides a set of tools to perform various types of diffusion MRI analyses, from various forms of tractography through to next-generation group-level analyses. It is designed with consistency, performance, and stability in mind, and is freely available under an open-source license. It is intended to simply these processing steps for most commonly-used DWI acquisition strategies, whilst also providing support for some more exotic acquisitions. The “example usage” section demonstrates the ways in which the script can be used based on the (compulsory) -rpe_* command-line options. This repository contains scripts and documentation for processing diffusion MRI data using MRtrix3, including preprocessing, fiber orientation distribution analysis, and tractography.
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