Web Reference: Clustal Omega is a new multiple sequence alignment program that uses seeded guide trees and HMM profile-profile techniques to generate alignments between three or more sequences. Multiple sequence alignment (MSA) is the process or the result of sequence alignment of three or more biological sequences, generally protein, DNA, or RNA. These alignments are used to infer evolutionary relationships via phylogenetic analysis and can highlight homologous features between sequences. The NCBI Multiple Sequence Alignment Viewer (MSA) is a graphical display for nucleotide and protein sequence alignments.
YouTube Excerpt: Multiple sequence alignment
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